Photo by Artem Podrez on Pexels.com
Writers want their smart characters to sound smart. Making a character sound smart sounds hard. But really it just requires a surface-level understanding of the topics and an understanding of keywords.
As a scientist (a chemist) and a writer, I understand this challenge well. So I thought I would help by explaining some basic concepts, keywords, and tools used by scientists. This will be the first in a series of posts highlighting interesting parts of science (mainly chemistry) for writers looking to beef up their technobabble.
My own experience and knowledge of chemistry has biased much of this. My fellow scientists who are reading this and feel their favorite topics have been ignored can resolve this grievance by submitting a guest post or leaving a comment.
The “Three” Branches of Science
There are three basic branches of science, but each of them has many subfields and specialties each with it’s own quirks, norms, and standards. Do not mistake these fields as exclusive. Each field may have it’s own focus but in truth the are better at denoting specialties than limits. The lines that separate these fields are becoming blurrier as time goes on and science becomes increasingly interdisciplinary.
Physics – the “most fundamental science” according to Wikipedia. Physics aims to study force, energy, and motion to understand the fundamental laws of the universe.
Chemistry – the “central science.” Chemistry fills a space between physics and biology. Sometimes it is hard to determine where one begins and the other ends. In general, chemistry is concerned with reactions between different chemicals, or analysis of chemicals and their behaviors.
Biology – this field is concerned with the study of living things. Many think of counting fruit flies and dissecting frogs when they think of biology. Much of modern biology shares techniques with biochemistry as scientists have tried to pull apart the secrets of smaller and smaller systems.
Common Vocabulary
Accurate – often confused with precise. To say that something is accurate assumes that there is a “true” value.
Aliquot – a very specific portion taken from a larger sample of liquid sample.
Amino Acids – amino acids are the building blocks of proteins. There are twenty common amino acids and all share some common structural features.
Atoms – atoms consist of a nucleus containing protons and neutrons, and are surrounded by a collection of “orbitals” where the atom’s electrons are found. An atom is composed primarily of empty space.
Atomic Orbitals – regions of space around an atom where an electron is likely to be. Orbitals that farther away from the nucleus contain higher energy electrons.
Bacteria – ubiquitous and mostly harmless microorganisms. Normally we only care about bacteria when we are sick. Bacteria inside our bodies perform many vital functions that are not completely understood.
Deoxyribonucleic Acid – nature’s data storage. DNA tells cells how to build the proteins that keep them functioning.
Elements – an element is a pure substance that contains only one type of atom (not counting isotopes). Elements can now be created artificially. Many of these are unstable and decay quickly, but some researchers have speculated about a potential “island of stability” hiding among the undiscovered high-mass artificial elements.
Evolution – the theory of evolution is a theory, as far too many would like to say. You can read more about that later. But it’s worth remembered that evolution is a fact. If you can’t wait a few million years you can watch it happen in a petri dish. The Theory of Evolution is simply out best explanation of how it works. Another vital thing to remember is that evolution has no pre-determined direction. “Good enough” is enough for nature.
Functional Groups – a segment of a molecule that determines is properties in a reaction. Examples of functional groups include hydroxyl groups, carbonyls, and much more.
Hypothesis – a hypothesis is an educated guess. A scientist takes known information and uses this information to predict what will happen in their experiments.
Inorganic Molecules – defined simply as “not organic,” inorganic molecules can contain both metals and non-metals.
Ions – ions are atoms that have lost or gained electrons and have a positive or negative charge as a result. Paired positive and negative ions form ionic salts.
Isotopes – isotopes are rarer forms of elements that differ in the number of neutrons contained in their nucleus. Natural samples contain a mix of isotopes in different rations depending on purity. Isotopes will vary in atomic mass and stability. These properties make isotopes useful in many applications.
Law – a law describes a known truth about the universe. Theories explain how laws work, laws do not change when a new theory is devised.
Light – both a wave and a particle. Light is a form of electromagnetic radiation. Light interacts with matter in a myriad of interesting ways. Scientists often take advantage of these interactions to study properties of matter that are invisible to the naked eye.
Molecules – molecules are built from atoms. Most things we interact with are some kind of molecule. Bonds within molecules are the result of interactions between electrons and atomic orbitals.
Organic Molecules – the components of gasoline are organic. Organic molecules make up all living things on earth and many dead or inert things as well. Carbon and hydrogen are the primary elements that make up organic molecules.
Peer Review – When a scientists completes a project they write up the results and submit it to a relevant journal in their field. The editor at that journal decides whether the topic is relevant to their publication. If it is, they send the article to reviewers, who are normally other experts in the field. These reviewers look at the article, comment on its merit, and specify what in the article needs to be changed or corrected. An article might go through multiple rounds of corrections before the reviewers decide it is worthy of publication.
Precise – often confused with accurate. Precision is about consistency. Repeated measurements of similar value are said to be precise. We can’t always expect to be accurate, so we aim to be precise instead.
Precipitate – a precipitate is a solid that forms out of a solution.
Proteins – these are how living cells do things. Proteins serve as structural elements, transport molecules, catalysts, and many other things.
Polymers – large chains of molecules constructed from smaller subunits called monomers. Polymers have many useful properties. Kevlar, nylon, spider silk, cellulose, and all plastics are polymers.
Redox Reactions – redox reactions are a huge part of chemistry and biology. The word redox comes from the two related reactions, reduction and oxidation, that are part of every redox system. A useful mnemonic is LEO the lion says GER. Lose Electrons = Oxidation. Gain Electrons = Reduction.
Ribonucleic Acid – DNA’s less popular cousin. RNA carries out several functions inside of a cell. For example, mRNA carries instructions from the nucleus to the ribosome.
Solutions – solutions are everywhere. Solutions have two parts; the solute and the solvent. The solute is a solid that dissolves into a liquid, the solvent. A good rule of thumb when making solutions is that like dissolves like. Polar compounds dissolve in polar solvents, nonpolar compounds dissolve in nonpolar solvents.
Theory – these explain how a particular phenomenon works and why.
Viruses – bits of DNA or RNA bundled up in a shell of proteins and sometimes lipids. Viruses can only survive for a short time outside of a host and reproduce by hijacking the machinery inside of host cells to make more of themselves.
Qualitative – qualitative measurements are somewhat vague. They care about quantities like bigger, smaller, lesser, greater, and so on.
Quantitative – quantitative measurements are exact. They yield a specific number and should have all kinds of statistical analysis to go alongside them.
Quantum – science fiction writers frequently abuse this word. Which is understandable, many trained and experience scientists struggle to grapple with quantum physics because of how unintuitive it is. At this scale the classical physics described by Newton is no longer adequate to model what we observe. So we have a separate branch of physics called quantum physics to describe the behavior of particles on the subatomic scale. Quantum physics is based on probabilities and energy. We can’t nail down the precise location of an electron, but we can determine where it is most likely to be.
Common Laboratory Tools
Balances – many people will recognize these as scales. Many classrooms still used old fashioned balances not unlike the scales found in a doctor’s office. Modern laboratory balances are electronic and can measure mass with a high degree of accuracy.
Dewar – a vacuum insulated container that can be filled with liquid nitrogen, dry ice, or ice water. A dewar is useful for a keeping a sample cold for extended periods.
Gloves – there are two reasons to wear gloves. To protect the scientist from the sample, or to protect the sample from the scientist. The same properties that make many chemicals useful also make them dangerous to human life. Just like many bacteria and viruses that are of interest to scientists are also dangerous. In other cases it is the scientist who could damage the sample. Humans are full of DNA, proteins, and all sorts of other things that could contaminate biological and forensic samples. Gloves are an important part of this. Another important thing to remember about gloves is that the material matters. Nitrile gloves are probably the most common but not all chemicals are compatible with nitrile. Some chemicals may breakdown nitrile or soak right through. Gloves made of other materials are available for those instances.
Glove Boxes – for samples that must be rigorously protected from oxygen, or for samples that may be dangerous to the user, glove boxes are the best option. Glove boxes are exactly what the sound like. A large box, with a glass window and a pair of large rubber gloves. The inside of a glove box is filled with an inert gas like argon or nitrogen.
Heating Mantle – chemists use heating mantles to drive chemical reactions by converting electricity into heat. Heating mantles are controlled by a variac that regulates the supplied voltage. Some heating mantles have a built-in variac, but in most cases the variac is a separate component. Heating mantles are often placed on top of magnetic stir plates.
Hot Plates/Stir Plates – hot plates are another option for heating solutions and materials in lab. Many have a built-in magnetic stirring function that can make a magnetic stir bar inside the reaction vessel spin.
Mortar and Pestle – a frequent component of imagined alchemy labs. Mortar’s and pestles remain useful tools in chemistry and biology labs.
Pipettes – pipettes transfer small volumes of liquids. Some pipettes are carefully calibrated, others are little more than fancy eye droppers.
Photo by RF._.studio on Pexels.com
Spatulas – spatulas are used to move solid chemicals from one place to the other. For example, from the bottle to a balance or from a weigh boat to a reaction flask. Metal spatulas will be common to most undergraduate, but some labs use disposable plastic spatulas.
Syringes – syringes are incredible useful. Biologists may find many uses for syringes in drawing blood or injecting drugs. Syringes are used to work on air free reactions. Syringes are fantastic for piercing septums and adding or subtracting aliquots with minimal interference from surrounding oxygen.
Common Laboratory Instruments and Techniques
Some instruments are available from commercial sources for thousands or millions of dollars. Others are so specific that they need to be custom built by the user.
Centrifugation – centrifuges separate sample components by density. The centrifugal force causes high density sample components to move outward and form layers.
Chromatography – chromatography separates sample components. All chromatography involves a mobile phase and a stationary phase. The mobile phase carries the sample through the stationary phase. As the sample interacts with the solid phase it becomes separated into its components. Many techniques pair chromatography with another analytical technique such a spectroscopy or mass spectrometry.
Electrophoresis – electrophoresis describes the movement of charged particles in an electric field. Multiple separation techniques use electrophoresis to separate sample components such as gel electrophoresis or capillary electrophoresis.
Fluorescence Spectroscopy – some molecules absorb light at one wavelength and emit light at another. Fluorescence is useful in many instances and especially in biology and biochemistry. The strong signal given by fluorescence makes it easy to distinguish from background noise. This is its main advantage over absorbance spectroscopy.
Infrared Spectroscopy (IR) -heat is transmitted through infrared waves. When those waves hit a molecule, parts of that molecule vibrate in characteristic ways. These vibrations are like finger prints for different functional groups.
Nuclear Magnetic Resonance Spectroscopy (NMR) – probably one of the most useful instruments in modern chemistry. Nuclear Magnetic Resonance takes advantage of the “spin” that is an inherent property of subatomic molecules like protons and electrons. Basically they behave like tiny magnets. An individual spin has a value of either +1 or -1 and when opposite spins are paired these spins cancel each other. Certain isotopes of common elements have an odd number of subatomic particles in their nucleus resulting in a non-zero spin. NMR works by placing a sample inside of a magnetic field. The unpaired spins then align with the field and the instrument hits the sample with radio waves of a specific frequency. The unpaired spins then flip as they absorb the energy from the radio waves and release energy as they return to their original orientation. The environment surrounding each unpaired spin affects the signal they emit, allowing us to determine the structure of molecules. Proton and Carbon 13 NMR are most common, but isotopes of Oxygen, Fluorine, Phosphorus, and more can also be targeted. Special, expensive solvents have to be used for liquid samples to avoid interferance. The same technology is also used in MRI except in this case the density of spins is used rather than the individual behavior of those spins.
Mass Spectrometry (MS) – another incredibly useful instrument in modern science. Mass spectrometry begins by injecting a sample, ionizing it, and shooting it at a charged plate. This results in peaks that show us the mass-to-charge ratio. Mass spectrometry can do a lot. So much that mass spectrometry research almost constitutes its own subfield, but it is useful to all other niches of chemistry.
Ultraviolent/Visible Spectroscopy (UV/Vis) – UV/Vis instruments are used to study a sample’s interactions with light in the visible and ultraviolet range. There are two basic types of readings we can get from this: absorbance and transmission. Absorbance is how much light the sample absorbs, transmission is how much light passes through the sample. Accurate readings depend on knowing the emission profile of the light source. Basic instruments assume that this profile is constant, more sophisticated instruments take constant readings of the light source. Interference in these experiments may come from fluorescence in the sample or form surrounding light sources.
X-Ray Spectroscopy – of all the electromagnetic waves X-Rays contain the most energy and are the most destructive. These high energy rays frequently ignore anything outside the nucleus. Various forms of X-Ray spectroscopy are used to determine the structures of solid crystals and identifying the elements and isotopes in a sample.
